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View Structure Prediction Details

Protein: col-114
Organism: Caenorhabditis elegans
Length: 321 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-114.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
284.0 [0..44] [320..1482]

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Predicted Domain #1
Region A:
Residues: [1-321]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDESCQRIK AYQWVANIAM CFAIVSVLTV CVSMPAIYMY MFHVKQLINT EVVSCEDHAR  60
   61 EIWREVEIMK NLPFTNRTSR FPRQAAYKDA APAGGGGGGE KYSEAPPVIE AAGGGSCGGC 120
  121 CPGGPGPNGK PGKPGRPGKP GAPGLPGVPG KTTIQAPCEA ASPPPCRVCP VGMPGEQGVT 180
  181 GAPGDKGPAG QPGRNGPDGP NGEPGPKGPP GQPGADGQPG MPGEPGKDAP QEGSPVPGDP 240
  241 GPPGDSGIPG PPGPPGMAGP DGIPGMGGAK GQNGPDGPPG ASGESGPNGP PGSGGGAGEK 300
  301 GICPKYCAID GGVFFEDGTR R

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Detection Method: PSI-BLAST
Confidence: 30.522879
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle