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View Structure Prediction Details

Protein: lfe-2
Organism: Caenorhabditis elegans
Length: 461 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lfe-2.

Description E-value Query
Range
Subject
Range
gi|11359732, gi|... - gi|2898162|gb|AAC38962.1| inositol trisphosphate 3-kinase form 3 [Caenorhabditis elegans], pir||T425...
496.0 [0..1] [461..1]

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Predicted Domain #1
Region A:
Residues: [1-143]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEAIYAKIM GVGTSRHDKR QGCWSWGGSS NSEEKRMKRP KKLPSKLRLK ISGNQRRRRD  60
   61 DTFVVWEEIP TPSVCDHRDT MNSEASSSPP SAPTQERLMQ IISCFPYPTT RPASPQCLPK 120
  121 PSPESCEHRA FCDAFGKLVQ VSV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [144-461]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETMAITALPM DVWLKERLKK WVQLSGHEGS IVPATPHTLY KKQCANCGEG RAYKNISKDP  60
   61 ALDGFTPKYY DELEKNEEHF IEIEDLLQQF HDPTKTAIMD IKIGTRTFLE SEVSNTKKRA 120
  121 DLYEKMVAID NDEPTEEERK CGAITKLRYM QFRERESSTA QLGFRIEAAK RLEGALEKNF 180
  181 KKVRTVEDVT TTFMDFFGTQ RSRVRQQLIE RLKSMRKAIE HSSFFNSHEV VGSSILIVFD 240
  241 TEKVGCWMID FAKSSPVPNG RTLNHRTTWI PGNNEDGYLI GIDNLVKILE ELPEYGEHPD 300
  301 DQLMVTEEVI ARMKNTKS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 94.154902
Match: 2aqxA
Description: Crystal Structure of the Catalytic and CaM-Binding domains of Inositol 1,4,5-Trisphosphate 3-Kinase B
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle