| Protein: | apl-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 684 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for apl-1.
| Description | E-value | Query Range |
Subject Range |
|
|
407.0 | [0..6] | [681..1] |
|
Region A: Residues: [1-120] |
1 11 21 31 41 51
| | | | | |
1 MTVGKLMIGL LIPILVATVY AEGSPAGSKR HEKFIPMVAF SCGYRNQYMT EEGSWKTDDE 60
61 RYATCFSGKL DILKYCRKAY PSMNITNIVE YSHEVSISDW CREEGSPCKW THSVRPYHCI 120
121
|
| Detection Method: |  |
| Confidence: | 43.69897 |
| Match: | 1mwpA |
| Description: | N-terminal domain of the amyloid precursor protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [121-204] |
1 11 21 31 41 51
| | | | | |
1 DGEFHSEALQ VPHDCQFSHV NSRDQCNDYQ HWKDEAGKQC KTKKSKGNKD MIVRSFAVLE 60
61 PCALDMFTGV EFVCCPNDQT NKTD
|
| Detection Method: | |
| Confidence: | 12.221849 |
| Match: | 1owtA |
| Description: | Amyloid beta a4 protein copper binding domain (domain 2) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [205-355] |
1 11 21 31 41 51
| | | | | |
1 VQKTKEDEDD DDDEDDAYED DYSEESDEKD EEEPSSQDPY FKIANWTNEH DDFKKAEMRM 60
61 DEKHRKKVDK VMKEWGDLET RYNEQKAKDP KGAEKFKSQM NARFQKTVSS LEEEHKRMRK 120
121 EIEAVHEERV QAMLNEKKRD ATHDYRQALA T
|
| Detection Method: | |
| Confidence: | 16.39794 |
| Match: | 1rw6A |
| Description: | human APP core domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [356-684] |
1 11 21 31 41 51
| | | | | |
1 HVNKPNKHSV LQSLKAYIRA EEKDRMHTLN RYRHLLKADS KEAAAYKPTV IHRLRYIDLR 60
61 INGTLAMLRD FPDLEKYVRP IAVTYWKDYR DEVSPDISVE DSELTPIIHD DEFSKNAKLD 120
121 VKAPTTTAKP VKETDNAKVL PTEASDSEEE ADEYYEDEDD EQVKKTPDMK KKVKVVDIKP 180
181 KEVTIEEEKK APKLVETSVQ TDDEDDDEDS SSSTSSESDE DEDKNIKELR VDIEPIIDEP 240
241 ASFYRHDKLI QSPEVERSAS SVFQPYVLAS AMFITAICII AFAITNARRR RAMRGFIEVD 300
301 VYTPEERHVA GMQVNGYENP TYSFFDSKA
|
| Detection Method: | |
| Confidence: | 5.045757 |
| Match: | 2i1jA |
| Description: | No description for 2i1jA was found. |
