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View Structure Prediction Details

Protein: pal-1
Organism: Caenorhabditis elegans
Length: 270 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pal-1.

Description E-value Query
Range
Subject
Range
HXDBA_TAKRU - Homeobox protein Hox-D11a OS=Takifugu rubripes GN=hoxd11a PE=3 SV=1
125.0 [0..10] [266..11]

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Predicted Domain #1
Region A:
Residues: [1-193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVDVKSDFS ENESSSTPSP TTVPADVTWP HYPMMPFMQP HPLREKMLQP TFDPQIYGRW  60
   61 SQMGDTGFYG HPDLYPFGLP QLAANGQIPA VEAVDVKPPL SNGSSSSDSG MYPSPSDMMT 120
  121 PFPSTSSGAA SSSELSAAAA AAANYQMRAA TCYQQSVWPF MDYQQFQGFS WKMPLGNNHG 180
  181 KDRRSSSDGK TLP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [194-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGPGTNNVRV RTADKYRMVY SDYQRLELEK EFHTSPFITS DRKSQLSTML SLTERQIKIW  60
   61 FQNRRAKDRR DKQKIRL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.69897
Match: 1pufA
Description: Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA
Matching Structure (courtesy of the PDB):

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