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View Structure Prediction Details

Protein: cyb-3
Organism: Caenorhabditis elegans
Length: 383 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cyb-3.

Description E-value Query
Range
Subject
Range
gi|73999528 - gi|73999528|ref|XP_544149.2| PREDICTED: similar to G2/mitotic-specific cyclin B1 [Canis familiaris]
300.0 [0..6] [373..24]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRSQAKNVD LTSQDSRHQQ KRKQAEQLDA LKNPSEPAAK KQHSKGLTEL RAHISGFKID  60
   61 SAKRDPLGKS RTSRRDVENL PPQKSRYVDP CPHYDYDLEE AGNP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSISDYAQGI FDYYRHREVH FRVRKYLHKH PEVDVKTRAI LIDWMVEIQE TFELNHETLY  60
   61 NAVKLTDMYL CKTKNVDKNT IQKLACVAIF IAAKYDERSP PLVDDLIYLS GDRFSRDELL 120
  121 AMERELFATV GYDLGSPLSY RYLRRFGRVC RVDMKTLTMG RFILETSLMV YEYAMVSQSR 180
  181 LAAAAFVLAM RMLDKNNEYE WNPVLEKYSG FTGEEVMPLV EHMNHILHFS KDKWAQLTSV 240
  241 RQKYSHEVFF HVASIPMLPD TLKVVDSHTY APVPMLSYP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.30103
Match: 2jgzB
Description: No description for 2jgzB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle