YRC Public Data Repository - Protein Structure Prediction

Protein:	CE27710
Organism:	Caenorhabditis elegans
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE27710.

Description	E-value	Query Range	Subject Range
gi\|73976765 - gi\|73976765\|ref\|XP_857041.1\| PREDICTED: similar to Polyadenylate-binding protein 4 (Poly(A)-binding ... gi\|76689265 - gi\|76689265\|ref\|XP_880848.1\| PREDICTED: similar to Polyadenylate-binding protein 4 (Poly(A)-binding ...	108.0	[0..2]	[101..55]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFNPPANS NHGYNDDVNT GYNARMHSKL AEREGFHLGN GSDEPRTLYV GNLDSTVTED  60
   61 FIATLFNQIG SVTKTKVIFD ELGYLATNAQ GGNQSTPTLR QWF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.39794
Match:	1cvjA
Description:	Poly(A)-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.950788308762215	bayes_pls_golite062009
nucleic acid binding	0.29562225149076	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: