| Protein: | npp-8 |
| Organism: | Caenorhabditis elegans |
| Length: | 411 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for npp-8.
| Description | E-value | Query Range |
Subject Range |
|
|
517.0 | [0..12] | [411..16] |
|
Region A: Residues: [1-348] |
1 11 21 31 41 51
| | | | | |
1 MSVSFMELGS ADSAEAAANK VAHHVEQMME TSDFFDRLTQ HGTTPVSGLG EKFYVKGAPE 60
61 FVSTRRIPIP GELQMQMSNI HSEFSMGFFT QISRVWVVID NNLYMWNYET NDDLAFFDSS 120
121 DAAILKVSLV NIKPGVFEPE IQYGLVVGTI SDICLYPVFD FVENGASSIS IDSKRCFKIA 180
181 LDGATVNDIS YTSNGRVFYT ADDQLFEFVY EKQNGWFGST NHKCRGVNQT ASILGTLISL 240
241 PFFGSSKEPL DQITIDKSRN IMYLLGRAGT VSVWDLGADG AACAKFLSVP ISKIAHEAHI 300
301 LTQFGHDETS FHSITSIKAL EASQSAALNL VATTAKGVRL YFSVSTGP
|
| Detection Method: |  |
| Confidence: | 1.23 |
| Match: | 1xksA |
| Description: | The crystal structure of the N-terminal domain of Nup133 reveals a beta-propeller fold common to several nucleoporins |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [349-411] |
1 11 21 31 41 51
| | | | | |
1 QSTMAMFNNS GTPNERNRPQ TSVRPQCLRV AHVRFAPGVT PASIYGDGPN GVSVVYADEC 60
61 TRL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
