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View Structure Prediction Details

Protein: nhx-9
Organism: Caenorhabditis elegans
Length: 647 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhx-9.

Description E-value Query
Range
Subject
Range
gi|28478878, gi|... - gi|75832049|ref|NP_001028461.2| solute carrier family 9 (sodium/hydrogen exchanger), member 2 [Mus m...
375.0 [0..3] [638..64]

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Predicted Domain #1
Region A:
Residues: [1-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHEYDIEEL FTWKWDDVHH VYVITVWLLI ASLAKILFNL MKPISKWCPD SSLLIIVGLA  60
   61 LGWILHQTSL SGATLDSHTF FLYLLPPIIF DAGYFMPNRA LFENFDSVLV FSVFGTIWNT 120
  121 FAIGGSLLLM AQYDLFTMSF TTFEILVFSA LISAVDPVAV IAVFEEIHVN EFLFINVFGE 180
  181 ALFNDGVTVV LYQMFKSFAL IG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [203-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SENLSVLDYA TGGLSFFVVA LGGAAVGIIF AIAASLTTKY TYDVRILAPV FIFVLPYMAY  60
   61 LTAEMVSLSS IIAIAICGML MKQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [286-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YIKGNVTQAA ANSVKYFTKM LAQSSETVIF MFLGLSTISS QHHFDLYFIC ATLFFCLIYR  60
   61 AIGIVVQCYI LNRFRAKKFE MVDQFIMSYG GLRGAIAYGL VVSIPASITA KPMFITATIA 120
  121 VIYFTVFLQG ITIRPLVNFL 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [426-647]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KIKKKEERDP TMVESVYNKY LDYMMSGVED IAGQKGHYTF IENFERFNAK VIKPVLMRHQ  60
   61 KRESFDASSI VRAYEKITLE DAIKLAKVKN NIQNKRLERI KSKGRVAPIL PDKISNQKTM 120
  121 TPKDLQLKRF MESGENIDSL YTLFSDLLDR KLHEMNRPSV QITDVDGQDD IQDDYMAEVG 180
  181 SRSNLSAMFR STEQLPSETP FHSGRRQSTG DLNATRRADF NV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 2i1jA
Description: No description for 2i1jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle