YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE27407
Organism: Caenorhabditis elegans
Length: 352 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE27407.

Description E-value Query
Range
Subject
Range
gi|157761859 - gi|157761859|ref|XP_001673272.1| Hypothetical protein CBG01446 [Caenorhabditis briggsae AF16]
gi|39588809, gi|... - gi|39588809|emb|CAE58333.1| Hypothetical protein CBG01446 [Caenorhabditis briggsae], gi|187038551|em...
524.0 [0..23] [329..18]

Back

Predicted Domain #1
Region A:
Residues: [1-352]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHHLLLYFV LIAGFLLTVE TKNECYSCSG VCHNENCNCQ MGSCESSQCF IEKKPTEIPG  60
   61 SMKITKGCLR RTSRIHHGCE HDHFSDHILC VCQGSYCNDR IVMNTTRQKY TRTIQCRECS 120
  121 EKNPNCGSSC EGHWCHEDMS TGASGCGYGP PALPFYYRGP ELFYYRSKVC ITLSRGAGKP 180
  181 RRHCICNTAN CNNVYNFQYI ARDREKESSL RSRSLTLSAT DYTLPLQTCY NCETNTQDAT 240
  241 AMSHTTNCRS NRCLGHYCTY AAQRHTSKSS MGRSNLVHAV SELQGCMNVS DKTHIQIGCS 300
  301 KKWISDEYEE IHCACRGNLC NSDSLTATSP KLLQIVHVLL LLPAVLYHHF LA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.6
Match: 1ywhA
Description: crystal structure of urokinase plasminogen activator receptor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle