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View Structure Prediction Details

Protein: CE27266
Organism: Caenorhabditis elegans
Length: 623 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE27266.

Description E-value Query
Range
Subject
Range
gi|157745907 - gi|157745907|ref|XP_001668050.1| Hypothetical protein CBG03903 [Caenorhabditis briggsae AF16]
gi|187036106, gi... - gi|39595275|emb|CAE60312.1| Hypothetical protein CBG03903 [Caenorhabditis briggsae], gi|187036106|em...
907.0 [0..1] [613..932]

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Predicted Domain #1
Region A:
Residues: [1-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYKTCPFHL VFLYSINPRE PRLRKKIYYM METESRLVVS HALIMYDYNQ EGELPRMHGG  60
   61 YLKRFAKRAT KRPDPFFQPT QIHDIDNDVS DMSECEKECP FAVPAQAADD GSLYLQLLDM 120
  121 EFWNDRNRQL HFLVNKPSLI ESLGCLNNRV PALPPATTGK AAFVFFIDGL EVDARNLTCD 180
  181 GLVPWSENTS TNPHGITKRP KSAKQALALN REGQLRIWKT PSSHRSDLIE FQLHVYTATL 240
  241 PRCPRLRKKV TYVLKNGHQI GNAMIIYWYT EPGEMPAPVN 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [281-342]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSTMSSAQEY SLQRLPPHIR EDVLRLLARM TPAEVAKVIL EKYGIQVNTK MLYYVRRREI  60
   61 MA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [343-405]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATDGIRDAED DHDPYELKNE MIVSAAAGDF VDDWTTDTAG ASAEASEGGS RKKNVHLEEM  60
   61 LDE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [406-525]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RELQVSHTEE IQQPSSSQQQ IQLPYRKAKY QEPKNFGQQS SGLPLSQSGM ARGTSRNEAL  60
   61 FRIAKNSFGS ATDNETFDLL FKMLFEKSEH RLLQIVNHTF GVEIMAGEEM DNGEMHLHMA 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [526-623]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDGAIVEEIV EEEVIGTVGD DVNLEEEVHE NEPKVYTGEK QINDVLEQVV VEEPNHHDDH  60
   61 PPHELLEEDA LVNPDDVIVD PNQLIIHDDD DQRQQNIQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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