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View Structure Prediction Details

Protein: CE27218
Organism: Caenorhabditis elegans
Length: 397 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE27218.

Description E-value Query
Range
Subject
Range
FGFR3_CHICK - Fibroblast growth factor receptor 3 OS=Gallus gallus GN=FGFR3 PE=2 SV=1
294.0 [0..3] [397..362]

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Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLRNLFPIF IYIIFVLLFL ALSLFLLYIW RRILTNSSNS DLGGSEEDVE RSLLTTSLPI  60
   61 SNKYDLDRTR IQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-397]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TESELISETI KSLIGDNHLE IDPENLKIST ENYIGSGFFG TVYRAELRRE RRNSNFMIVA  60
   61 VKEPSNIHNI RQKKILHEEL NVMCSMEKHP NILSLVGVVT QRNVMIVTEY VEDGDLLKFL 120
  121 RKCKFDKDSV KLDEKSLCKA DLFSFTFQIA NGMQYLERVP CVHRDLALRN VLIKNNGVLK 180
  181 IADFGLARRH DKKDYYRTKT TDTALPIKWL APECFEEEEE KIRFDSKSDV WSYGVCLYEI 240
  241 FSLGESPYNE LDSNNFAFLQ VLADFLRKGN TLSEPEHCAP KMYYFMKSCW NLIPEERPSF 300
  301 TACTNFSRTQ LNQLSNEVQL FEPIE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.0
Match: 2pvfA
Description: No description for 2pvfA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle