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View Structure Prediction Details

Protein: psr-1
Organism: Caenorhabditis elegans
Length: 400 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for psr-1.

Description E-value Query
Range
Subject
Range
JMJD6_CAEBR - Bifunctional arginine demethylase and lysyl-hydroxylase psr-1 OS=Caenorhabditis briggsae GN=psr-1 PE...
gi|157757729 - gi|157757729|ref|XP_001671208.1| Hypothetical protein CBG01722 [Caenorhabditis briggsae AF16]
290.0 [0..1] [393..1]

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Predicted Domain #1
Region A:
Residues: [1-400]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLGRDRYSL PRTYKRVSHA KDKARPELRK FGWETLGYSE SFNLPPFRDS IQRVDGNNLT  60
   61 VEEFRRDFER PRIPVIITGL TDNWAAKDKW TVERLSKKYR NQNFKCGEDD NGNSVRMKMK 120
  121 YYHDYMLNNK DDSPLYIFDS SFAERRKTKK LSEDYSVPKF FEDDLFHYAD DKKRPPHRWF 180
  181 VMGPARSGTA IHIDPLGTSA WNSLLQGHKR WVLIPPIAPR DLVKPMAHEK GKHPDEGITW 240
  241 FQTVYKRVRS PSWPKEYAPI ECRQGPGETM FVPSGWWHVV INEEYTIAVT HNYCSVENLH 300
  301 LVWPKTVKGR PKLSKHWVKR LTEQRPELLE IIKSASEIPL YDMNESSSDS SSSSSSSDDS 360
  361 SDESDCDDSG RCGGRKRKND DRSNECPEKM STTYFQNSLV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.522879
Match: 2yu1A
Description: No description for 2yu1A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle