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View Structure Prediction Details

Protein: CE27053
Organism: Caenorhabditis elegans
Length: 515 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE27053.

Description E-value Query
Range
Subject
Range
gi|113426698 - gi|113426698|ref|XP_042698.4| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 22 (Ubiqui...
275.0 [0..23] [515..344]

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Predicted Domain #1
Region A:
Residues: [1-515]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDFVTDINN ATEELLKLNL ESAVTQDTFN LLVVYFNDLL VGKEKEIAEL KEEIEELKKP  60
   61 LEENKMAPLL EIVRSEVFPE QLEHPSKNAT NTGSRKRAHP KLFEASEPKV KSSNVSTDVI 120
  121 DGKKHNNRKT NSSRSFSKVN SSVTRKLVNT GNSCFLNSTM QALSSCHSFA LRCEQLYCLV 180
  181 RKNIDYFDNE ASHSEVLCRK YRVLIDFLKI MAALTKRSNS SKTQPEIIEA NLQTFRELIG 240
  241 MIRNDFANKN QQDAHEFLLM LFEAIDDVAE YKADNEGDDV KEAKQLNPIE AFKFNVETCY 300
  301 VCKGCSKEEV RVDVRNDLAV HMRDNLSVQE LLSSSFSTWT PIEKKCSSCN HQHAILSERI 360
  361 TRFPECLVIN LERYQLEGPQ FSTKKINCSL EPSFELDISS LQKFPEIEKN GLEQSEKQQD 420
  421 SQYGQLLDRM KSCEIIKCCE TKNIIMEEKH DKYSLVAAIC HLGETPTNGH YIAYTREDTE 480
  481 NSWLYCSDDL IRPATRSEIS LSIRTSGYIL FYEYE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.30103
Match: 2f1zA
Description: Crystal structure of HAUSP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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