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View Structure Prediction Details

Protein: tpxl-1
Organism: Caenorhabditis elegans
Length: 507 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tpxl-1.

Description E-value Query
Range
Subject
Range
gi|39579415, gi|... - gi|39579415|emb|CAE56721.1| Hypothetical protein CBG24508 [Caenorhabditis briggsae], gi|187040086|em...
215.0 [0..4] [506..40]

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Predicted Domain #1
Region A:
Residues: [1-197]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSQTIQEF DENFFSSFAV PKVKDYSRLS SSPSRDQPCE TSYFENHFPS LECDTPVKMQ  60
   61 LPKTKRESDD DLPSPTIDNL LSSSSESTVI NASQNDNTEE KQQQPIREPL KIVPNEDASA 120
  121 SGSGGENQLI EGLEKLSMFA PKAPEERLSQ RRRSEQRKKE EEDKRTSVIA PASGTRSRSI 180
  181 STKRSMSREP AAAAPRA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [198-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSVPRPPHNS VTRTISAPIA NTGPGVITRA MAARVAENVT KTSVRRSVMP LKVAQKTPVA  60
   61 AVKSDAATAG GDRSRDRTRR TNTTASRRSV FPNKPAAAAA NTTPIAPPRR SASANKATAP 120
  121 TSVSKLTPKI RPIATANRSS ILRMNVVKPT VPAPAPADAQ QNKAASRPAV PAGGAARNRQ 180
  181 PLRVNPGTPS TTIKKPPVAS SVQRQPP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [405-507]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRARSVDRSG QPPISASTPG KASRADLFNR LATPKVTATP TRTSHEGPAS SIRKSAVRPV  60
   61 PSYVYSSYKG MPSAGGLHGI RAPSKDRSTQ KPPAAASTPQ SKQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle