| Protein: | smg-4 |
| Organism: | Caenorhabditis elegans |
| Length: | 329 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for smg-4.
| Description | E-value | Query Range |
Subject Range |
|
|
146.0 | [0..8] | [204..1] |
|
Region A: Residues: [1-101] |
1 11 21 31 41 51
| | | | | |
1 MTDSKDGHVK VVLRRLPKYM TEHEVLEQIS PLPEEVIGTY FHPANFSFDR CAYATLTVNF 60
61 SEYCDSMMEF ERRFDGYIFV DSRGNDSAAV VEAASNQNFA K
|
| Detection Method: |  |
| Confidence: | 30.0 |
| Match: | 1uw4A |
| Description: | The structural basis of the interaction between nonsense mediated decay factors UPF2 and UPF3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.75748736237159 | bayes_pls_golite062009 |
| mRNA binding | 2.67679675039933 | bayes_pls_golite062009 |
| nucleic acid binding | 2.39584426231036 | bayes_pls_golite062009 |
| binding | 1.71154446874967 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.61170301639809 | bayes_pls_golite062009 |
| protein binding | 0.426607329742248 | bayes_pls_golite062009 |
| 0.24850555804347 | bayes_pls_golite062009 | |
| hydrolase activity | 0.0430264134452161 | bayes_pls_golite062009 |
|
Region A: Residues: [102-329] |
1 11 21 31 41 51
| | | | | |
1 CDRNRMKEDT RVGAILTDKY YLDFCKKLEE ERAIPILTLE QQIRKLNQPD DARTQIDKME 60
61 TPLVKYFFEK ETGKRRDYDA RRQRRDEKRA EKRDKVDKFE KHKNVLDILM KPSVPMASTS 120
121 ATTSKKDLKK EKPMTEKEKE RWEKQDAKRK ERNMIRKQKF LDEKKKKHEE REQDGPRVPR 180
181 DKKKERLAKP PRPSPAKTVG EQQGEDWIKK LTDPKSAPMK KKHDSPPN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
