YRC Public Data Repository - Protein Structure Prediction

Protein:	rps-17
Organism:	Caenorhabditis elegans
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps-17.

Description	E-value	Query Range	Subject Range
gi\|114658563, gi... - gi\|114658567\|ref\|XP_001159325.1\| PREDICTED: cytoplasmic polyadenylation element binding protein 1 is...	241.0	[0..2]	[127..451]
gi\|109082205 - gi\|109082205\|ref\|XP_001084315.1\| PREDICTED: similar to cytoplasmic polyadenylation element binding p...	241.0	[0..2]	[127..526]
gi\|76646952 - gi\|76646952\|ref\|XP_879148.1\| PREDICTED: similar to cytoplasmic polyadenylation element binding prote...	241.0	[0..2]	[127..451]
gi\|94391403 - gi\|94391403\|ref\|XP_998593.1\| PREDICTED: similar to 40S ribosomal protein S17 [Mus musculus]	227.0	[0..3]	[127..127]
gi\|115894372, gi... - gi\|115940463\|ref\|XP_001184609.1\| PREDICTED: similar to S17 [Strongylocentrotus purpuratus], gi\|11589...	218.0	[0..1]	[126..38]
RS17_COTJA - 40S ribosomal protein S17 OS=Coturnix coturnix japonica GN=RPS17 PE=2 SV=3 gi\|29149613 - gi\|29149613\|gb\|AAO46161.1\| ribosomal protein S17 [Coturnix coturnix] RS17_CHICK - 40S ribosomal protein S17 OS=Gallus gallus GN=RPS17 PE=2 SV=3 gi\|197127577, gi... - gi\|197127578\|gb\|ACH44076.1\| putative ribosomal protein S17 variant 1 [Taeniopygia guttata], gi\|19712...	208.0	[0..1]	[127..1]
gi\|60652803 - gi\|60652803\|gb\|AAX29096.1\| ribosomal protein S17 [synthetic construct]	208.0	[0..1]	[127..1]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRVRTKTVK KASRVLIEKY YTRMTNDFHN NKRVCDEVAI IGSKPLRNKI AGYITHLMRR  60
   61 IERGPVRGIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.154902
Match:	1rq6A
Description:	Solution structure of ribosomal protein S17E from Methanobacterium Thermoautotrophicum, Northeast Structural Genomics Consortium Target TT802 / Ontario Center for Structural Proteomics Target Mth0803
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [71-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IKLQEEERER RDNYMPEIST VDPSQLTSIK VDTDTSDMLK AAGFNLPNVT VEDQGKNKGK  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	4.113509
Match:	PF00833.9
Description:	No description for PF00833.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits