YRC Public Data Repository - Protein Structure Prediction

Protein:	rps-12
Organism:	Caenorhabditis elegans
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps-12.

Description	E-value	Query Range	Subject Range
gi\|114609445 - gi\|114609445\|ref\|XP_001155941.1\| PREDICTED: similar to 40S ribosomal protein S12 [Pan troglodytes]	167.0	[0..14]	[139..228]
gi\|219500954, gi... - gi\|219500954\|ref\|XP_002246877.1\| hypothetical protein BRAFLDRAFT_109012 [Branchiostoma floridae], gi... gi\|18845074 - gi\|18845074\|gb\|AAL79538.1\|AF470687_1 40S ribosomal protein S12 [Branchiostoma belcheri]	151.0	[0..10]	[140..2]
gi\|66548338 - gi\|66548338\|ref\|XP_624645.1\| PREDICTED: similar to 40S ribosomal protein S12 [Apis mellifera]	151.0	[0..1]	[140..1]
gi\|91085995 - gi\|91085995\|ref\|XP_972340.1\| PREDICTED: similar to S12e ribosomal protein [Tribolium castaneum]	149.0	[0..1]	[137..1]
gi\|62083415 - gi\|62083415\|gb\|AAX62432.1\| ribosomal protein S12 [Lysiphlebus testaceipes]	148.0	[0..1]	[139..1]
gi\|28566194 - gi\|28566194\|gb\|AAO43049.1\| 40S ribosomal protein [Perinereis aibuhitensis]	148.0	[0..1]	[139..1]
gi\|15213812 - gi\|15213812\|gb\|AAK92181.1\|AF400209_1 ribosomal protein S12 [Spodoptera frugiperda]	146.0	[0..1]	[140..1]
gi\|109088312, gi... - gi\|109088312\|ref\|XP_001090940.1\| PREDICTED: similar to ribosomal protein S12 isoform 3 [Macaca mulat...	145.0	[0..10]	[139..2]
gi\|50344482 - gi\|50344482\|emb\|CAH04327.1\| S12e ribosomal protein [Curculio glandium]	145.0	[0..1]	[137..1]

Back

Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDAGGDVQV APAAVAQGPM DKEGALRAVL RAAHHADGLA KGLHETCKAL DKREAHFCVL  60
   61 AENCDEPQYV KLVETLCAEH QIPLIKVADK KIIGEYCGLC KYDKEGKARK VVGCSSAVVT 120
  121 NWGNEEQGRA ILTDYFASKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.39794
Match:	1zwzA
Description:	No description for 1zwzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits