| Protein: | wrm-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 796 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for wrm-1.
| Description | E-value | Query Range |
Subject Range |
|
|
501.0 | [0..1] | [775..144] |
|
Region A: Residues: [1-111] |
1 11 21 31 41 51
| | | | | |
1 MDVDCAETFS QPCTPLNFNP MTPSTSRVST PVRPSSTMSA RQYSGSPFKA QPQNMEPSNS 60
61 RVQELREAAV GKRSYTNAWM QGTYAPPQMA GQQQRFSRPP SVIGSTMSHM T
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [112-208] |
1 11 21 31 41 51
| | | | | |
1 NMSEMTAYSY GGLSMLSVNT EMGEFNNFVN QAPYQRALTR VSQVSENQDP TNRQYPMTAP 60
61 EIIENLESTE LINQAAAIRA LEPIVKAGGM LQTWGPK
|
| Detection Method: | |
| Confidence: | 83.0 |
| Match: | 1wa5B |
| Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [209-796] |
1 11 21 31 41 51
| | | | | |
1 GAEPIIRALF QVLIPRPVEN ENVIRKAFEI LHHSILLSNK EIRRIDRMFF RLNAALMDPN 60
61 GPPVFNVPKP YSIYEIVMTR AIQLDTKFES SAMVLLVHLC CKPHFMKIFF GEDETQQSPA 120
121 HRRLHKIVIE FAIGNLRRPE TKSKNKGLCV SIIKNLSNKN ATIKDMSERL GVVSLFHQIM 180
181 QNEVIHEDLL WSTMQALTVF CGDVKNGTHF VQMGGAQVLC GLLSHGSTRL LHELLKCLRR 240
241 VSDLPAIQEQ DMKESIHCIV QLIGCSDVTI VELATGTLRN IGLHNKMNKA FMVQDGVTSH 300
301 AIAVLRTSEQ FTYQPHANID LYRKQILSIY ENCLSVLNNV TSMAPQDIKE SAVSACRMIS 360
361 ENADSAYVLL HYFNVGNRKC RKLAVTVMKR VIETVPAFAD PFVDLLGTTN EPLPILLLQR 420
421 AFQSLDEWRK TSVEMMNCDG RSAEQRRELD DRRKDHEDIV KRSVGLLTNL CSQANPRFFH 480
481 SLKLVLTNGT LNPFQWLTHE MSDGILQEWL AFILSICSRD ESLQTFMMYR FLEQAKMTEA 540
541 FFAELKARRQ NSNIQTMLSK IIDLGRHQQR IVSQQHQQHQ MQHHRQLM
|
| Detection Method: | |
| Confidence: | 89.09691 |
| Match: | 1jpwA |
| Description: | beta-Catenin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.5792930989505 | bayes_pls_golite062009 |
| protein transporter activity | 1.46178231098581 | bayes_pls_golite062009 |
| protein binding | 1.041337870941 | bayes_pls_golite062009 |
| transporter activity | 0.53053318170156 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.11990405994399 | bayes_pls_golite062009 |
