YRC Public Data Repository - Protein Structure Prediction

Protein:	kbp-3
Organism:	Caenorhabditis elegans
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for kbp-3.

Description	E-value	Query Range	Subject Range
LMA2_MOUSE, LAMA... - (Q60675) Laminin alpha-2 chain precursor (Laminin M chain) (Merosin heavy chain), Laminin subunit al...	171.0	[0..2]	[134..1672]
gi\|109457619, gi... - gi\|109460394\|ref\|XP_001062273.1\| PREDICTED: similar to Laminin alpha-2 chain precursor (Laminin M ch...	168.0	[0..2]	[134..1675]
gi\|109072892 - gi\|109072892\|ref\|XP_001105600.1\| PREDICTED: similar to laminin alpha 2 subunit precursor [Macaca mul...	164.0	[0..2]	[133..1676]
gi\|225000032, gi... - gi\|225000290\|gb\|AAI72564.1\| Laminin, alpha 2 [synthetic construct], gi\|225000032\|gb\|AAI72257.1\| Lami... gi\|28559088 - gi\|28559088\|ref\|NP_000417.2\| laminin alpha 2 subunit isoform a precursor [Homo sapiens]	164.0	[0..2]	[133..1676]
gi\|114609272 - gi\|114609272\|ref\|XP_527501.2\| PREDICTED: laminin alpha 2 subunit [Pan troglodytes]	164.0	[0..2]	[133..1676]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLNEYMDK IINRLKAVNE KDELVDEGMR KLQKCQEKIM KTRIDAQKHI DERHEQQSFE  60
   61 QQLLNKNMFE TEQLEEKLKR LDDENKIGNE REFNKKLEAI SAKWTDDVNL LKTTPNEPND 120
  121 GNRKKLSNLS NILV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits