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View Structure Prediction Details

Protein: rla-1
Organism: Caenorhabditis elegans
Length: 111 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rla-1.

Description E-value Query
Range
Subject
Range
gi|10177851, gi|... - gi|67633816|gb|AAY78832.1| putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana], gi|15238...
123.0 [0..3] [111..2]

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Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNQELACV YAALILQDDE VAITGEKIAT LLKAANVEFE PYWPGLFAKA LEGVDVKNLI  60
   61 TSVSSGAGSG PAPAAAAAAP AAGGAAPAAE TKKKEEPKEE SDDDMGFGLF D

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.997
Match: 1jj2G
Description: Ribosomal protein L10
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle