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View Structure Prediction Details

Protein: tpst-1
Organism: Caenorhabditis elegans
Length: 380 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tpst-1.

Description E-value Query
Range
Subject
Range
gi|39583256, gi|... - gi|39583256|emb|CAE60048.1| Hypothetical protein CBG03560 [Caenorhabditis briggsae], gi|187036452|em...
292.0 [0..1] [378..1]

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Predicted Domain #1
Region A:
Residues: [1-380]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKNRELLLV LFLVVFILFY FITARTADDP YYSNHREKFN GAAADDGDES LPFHQLTSVR  60
   61 SDDGYNRTSP FIFIGGVPRS GTTLMRAMLD AHPEVRCGEE TRVIPRILNL RSQWKKSEKE 120
  121 WNRLQQAGVT GEVINNAISS FIMEIMVGHG DRAPRLCNKD PFTMKSAVYL KELFPNAKYL 180
  181 LMIRDGRATV NSIISRKVTI TGFDLNDFRQ CMTKWNAAIQ IMVDQCESVG EKNCLKVYYE 240
  241 QLVLHPEAQM RRITEFLDIP WDDKVLHHEQ LIGKDISLSN VERSSDQVVK PVNLDALIKW 300
  301 VGTIPEDVVA DMDSVAPMLR RLGYDPNANP PNYGKPDELV AKKTEDVHKN GAEWYKKAVQ 360
  361 VVNDPGRVDK PIVDNEVSKL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.522879
Match: 1cjmA
Description: Aryl sulfotransferase sult1a3
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.10726811465896 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle