YRC Public Data Repository - Protein Structure Prediction

Protein:	CE26630
Organism:	Caenorhabditis elegans
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE26630.

Description	E-value	Query Range	Subject Range
gi\|66504876 - gi\|66504876\|ref\|XP_623063.1\| PREDICTED: similar to Transcription initiation factor IIA gamma chain (...	172.0	[0..5]	[111..2]
gi\|91086493 - gi\|91086493\|ref\|XP_970803.1\| PREDICTED: similar to transcription initiation factor IIA gamma chain [...	170.0	[0..5]	[105..2]
gi\|157167547, gi... - gi\|157167547\|ref\|XP_001654850.1\| transcription initiation factor IIA (TFIIA), gamma chain [Aedes aeg...	170.0	[0..5]	[108..2]
gi\|118784309, gi... - gi\|118784309\|ref\|XP_313653.3\| ENSANGP00000013128 [Anopheles gambiae str. PEST], gi\|116128445\|gb\|EAA0...	170.0	[0..5]	[107..2]
gi\|74224980 - gi\|74224980\|dbj\|BAE38203.1\| unnamed protein product [Mus musculus]	169.0	[0..6]	[108..3]
gi\|114052188, gi... - gi\|95102994\|gb\|ABF51438.1\| transcription initiation factor IIA gamma chain [Bombyx mori], gi\|1140521...	169.0	[0..5]	[109..2]
gi\|115388223, gi... - gi\|115388223\|ref\|XP_001211617.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	169.0	[0..3]	[110..4]
gi\|71002444, gi\|... - gi\|71002444\|ref\|XP_755903.1\| transcription initiation factor iia small chain [Aspergillus fumigatus ... gi\|159129958 - gi\|159129958\|gb\|EDP55072.1\| transcription initiation factor iia small chain [Aspergillus fumigatus A...	169.0	[0..3]	[110..4]
TfIIA-S-PA - The gene Transcription-factor-IIA-S is referred to in FlyBase by the symbol Dmel\TfIIA-S (CG5163, FB...	169.0	[0..5]	[105..2]
gi\|83770333 - gi\|83770333\|dbj\|BAE60466.1\| unnamed protein product [Aspergillus oryzae] gi\|220697940, gi... - gi\|238488629\|ref\|XP_002375552.1\| transcription initiation factor iia small chain [Aspergillus flavus... gi\|169762810 - gi\|169762810\|ref\|XP_001727305.1\| hypothetical protein [Aspergillus oryzae RIB40]	169.0	[0..3]	[110..5]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKPNYQLYR NTTLGQALQK TLDDFVGDQM IPDSLSKKIM DSFDKSINKI LPHKAKNKVN  60
   61 FRADKLRAYR YCDNVWTFIV EQIDLRDAVE GGTVDRLKIV ACDGQTKGQI GHA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.39794
Match:	1nvpD
Description:	HUMAN TFIIA/TBP/DNA COMPLEX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits