YRC Public Data Repository - Protein Structure Prediction

Protein:	CE26429
Organism:	Caenorhabditis elegans
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE26429.

Description	E-value	Query Range	Subject Range
gi\|66504876 - gi\|66504876\|ref\|XP_623063.1\| PREDICTED: similar to Transcription initiation factor IIA gamma chain (...	174.0	[0..3]	[121..2]
gi\|74224980 - gi\|74224980\|dbj\|BAE38203.1\| unnamed protein product [Mus musculus]	174.0	[0..3]	[111..2]
gi\|7494874 - gi\|7494874\|pir\|\|T15332 hypothetical protein B0336.5 - Caenorhabditis elegans	173.0	[0..1]	[124..196]
gi\|91086493 - gi\|91086493\|ref\|XP_970803.1\| PREDICTED: similar to transcription initiation factor IIA gamma chain [...	169.0	[0..3]	[105..2]
gi\|187032202, gi... - gi\|39584894\|emb\|CAE64318.1\| Hypothetical protein CBG08996 [Caenorhabditis briggsae], gi\|187032202\|em... gi\|157773491 - gi\|157773491\|ref\|XP_001664811.1\| hypothetical protein CBG08996 [Caenorhabditis briggsae AF16]	169.0	[0..1]	[125..1]
gi\|57108247 - gi\|57108247\|ref\|XP_535502.1\| PREDICTED: similar to general transcription factor Iia 2 isoform 1 [Can... CCDS10173.1_1 - null tr\|M3WHV3\|M3WHV3... - Transcription initiation factor IIA subunit 2 OS=Felis catus GN=GTF2A2 PE=3 SV=1 T2AG_MOUSE - Transcription initiation factor IIA subunit 2 OS=Mus musculus GN=Gtf2a2 PE=1 SV=2 T2AG_RAT - Transcription initiation factor IIA subunit 2 OS=Rattus norvegicus GN=Gtf2a2 PE=3 SV=1 gi\|109081344, gi... - gi\|109081344\|ref\|XP_001100320.1\| PREDICTED: similar to general transcription factor Iia 2 isoform 3 ... gi\|149691901 - gi\|149691901\|ref\|XP_001500046.1\| PREDICTED: similar to TFIIA small subunit [Equus caballus]	168.0	[0..3]	[112..2]
GTF2A2 - general transcription factor IIA, 2, 12kDa gi\|114657364, gi... - gi\|55642219\|ref\|XP_510452.1\| PREDICTED: general transcription factor IIA, 2, 12kDa isoform 4 [Pan tr... gi\|83035115, gi\|... - gi\|83035115\|ref\|NP_001032708.1\| general transcription factor IIA, 2, 12kDa [Bos taurus], gi\|81674371... gi\|123980684, gi... - gi\|60656075\|gb\|AAX32601.1\| general transcription factor IIA 2 [synthetic construct], gi\|208966358\|db...	168.0	[0..3]	[112..2]
TfIIA-S-PA - The gene Transcription-factor-IIA-S is referred to in FlyBase by the symbol Dmel\TfIIA-S (CG5163, FB...	168.0	[0..3]	[105..2]
gi\|55585039 - gb\|AAV53715.1\| transcription factor IIA gamma subunit [Oryza sativa (indica cultivar-group)] gi\|55585039 - gi\|55585039\|gb\|AAV53715.1\| transcription factor IIA gamma subunit [Oryza sativa (indica cultivar-gro...	167.0	[0..1]	[109..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSYALYRGT TLGQALDKTL EDMESEGLLT KSLASKVLQQ FDKSMNKQIS RLPKEKMNFC  60
   61 ATQLLTYRYC DNVWTFILNN VTLKDPQRSF DEPIDKLKVV ACDGRQTSLL QTLSAQGPSK 120
  121 RVNRAHAAAA GDDEDDDSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.154902
Match:	1nvpD
Description:	HUMAN TFIIA/TBP/DNA COMPLEX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits