YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE26346
Organism: Caenorhabditis elegans
Length: 289 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE26346.

Description E-value Query
Range
Subject
Range
gi|310204 - gi|310204|gb|AAA50568.1| receptor-linked protein tyrosine phosphatase
315.0 [0..5] [288..942]

Back

Predicted Domain #1
Region A:
Residues: [1-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLDDFKQEF SNLPGDPPSD LCTAFNQPVN NKKNRYLNIP CLDISRVQLK VMPNKNSTDY  60
   61 IHANYIRSPF LKRGYILTQG PKKETRADFW RMIWQENTTA IVMLCQFTET NREKCAEYFP 120
  121 RNAHCCLQFD KMSVSYEDST VNKSLVTTRL NLSYEGETRL ITHWLWKEWP DWQVPGSSEV 180
  181 MLKILRKIRA RSTPPVIHCS AGVGRSGTLM AVEIALQSIH SHFTLPDIKQ IVSHLRVTGR 240
  241 AASVQTLQQY MLIWKVLLDF GVAYKQITEE LAEKFNATYR RSLRSNNGT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.39794
Match: 2fh7A
Description: Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle