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View Structure Prediction Details

Protein: rpb-9
Organism: Caenorhabditis elegans
Length: 167 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpb-9.

Description E-value Query
Range
Subject
Range
gi|50797497 - gi|50797497|ref|XP_423952.1| PREDICTED: similar to DNA-directed RNA polymerase II 14.5 kDa polypepti...
158.0 [0..41] [167..77]

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Predicted Domain #1
Region A:
Residues: [1-167]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLQLKSKLE NVLSYFFRKM SQGYDNYDDM YDQNGASPAP SQNEKPGKSG PGFVGIKFCP  60
   61 ECNNMLYPRE DKESRVLMYS CRNCEHREVA ANPCIYVNKL VHEIDELTQI VGDIIHDPTL 120
  121 PKTEEHQCPV CGKSKAVFFQ AQTKKAEEEM RLYYVCASQD CQHRWTE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.69897
Match: 1i3qI
Description: RBP9 subunit of RNA polymerase II
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle