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View Structure Prediction Details

Protein: col-106
Organism: Caenorhabditis elegans
Length: 296 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-106.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
260.0 [0..36] [296..1431]

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Predicted Domain #1
Region A:
Residues: [1-296]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAFGTLACA SATVLTIGSL ATMCLIVSDI NGLYNDVMEE SRTTREVADD AWEELLRKNG  60
   61 APEASRAAVT AMLFGRNKRN AQCNCGAKSK GCPAGPPGPR GPNGAPGLDG PDGLDGPDGH 120
  121 PGYAAAIKEN FGGACISCPA GPAGPPGPDG CAGEPGTDGA PGEDGQNGAP GSPGGPGETG 180
  181 PQGHQGKPGR AGPRGPPGAK GQTYLPGSAG HPGNSGRRGP PGPPGANGKN GKQGADGIPG 240
  241 AGGAPGQHGV PGVDGSDGAP GEDAAPGGDA AYCPCPTRSV AVEAAPSQAE QIYKTH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.045757
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle