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View Structure Prediction Details

Protein: ebp-3
Organism: Caenorhabditis elegans
Length: 187 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ebp-3.

Description E-value Query
Range
Subject
Range
gi|12751130 - gi|12751130|gb|AAK07556.1| EBF3-L [Homo sapiens]
216.0 [0..29] [187..121]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQARNGEGLP TEGGPAAGAS AKTPSRMPAR SVPQKPVTTM RTPAATPAAP PTRPTPSRSS  60
   61 AAPRATAPTP TAAPPKTCAP PVRSASTVAA AAAAAPPGVD MATFNKLKE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.55
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [110-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELEEVTRQLT ESDNVIASLE KERDFYFSKL RTIEVICQDN ESIGNVEVNR VLEVLYETEE  60
   61 GFAPPEDEAN GGAEAEEF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.30103
Match: 1txqB
Description: Crystal structure of the EB1 C-terminal domain complexed with the CAP-Gly domain of p150Glued
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle