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View Structure Prediction Details

Protein: cogc-4
Organism: Caenorhabditis elegans
Length: 494 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cogc-4.

Description E-value Query
Range
Subject
Range
gi|40226121 - gi|40226121|gb|AAH27726.1| COG4 protein [Homo sapiens]
515.0 [0..5] [482..3]

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Predicted Domain #1
Region A:
Residues: [1-398]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEPILHSKF LSGLPAGRKN GVRHGEKPEK VGEKQFDFTR KIRELRLELE IKKREEERIE  60
   61 KDIAIILEEN TIDGGEQNRS FGLAVTRLNN HMLVVENSAK QLTSALKNIS VLADTISGRV 120
  121 SALDVAKTRV VGCLQLAGDM RDLGVCAEGI DDAIRSEDFE TASQHIHRFL TLDQAVFQIR 180
  181 EFKQKDATDS IRHSYEVLSS AKERLSKILK SRLTESVQKG DVAEMQRFIK MFPLIHEPDE 240
  241 GLQRYSVFLN QKIDKLAEDN LAIMKAGGTD DNRRNVLYAD TLFMFFEGVA EIIESNLPVL 300
  301 EHSYGLEKLL DFMFILQARI DEFFRRLHEE FDTRRRLSHF NRLVDDVIHQ KKAAEAVEDA 360
  361 PDPMEIDAIA SEICMMNTSA EMYWRFVSRR IGKNEVIR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.06
Match: 2oevA
Description: No description for 2oevA was found.

Predicted Domain #2
Region A:
Residues: [399-494]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPSGDGDDEE NEEARQERHR LRKEAKEQKM DQLLNRSRVG TKMQELIGNY CLLEHFYMLK  60
   61 SVQKAIKSDV KEDAGGLTRC GDKKYRKRPL KQEKIC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle