YRC Public Data Repository - Protein Structure Prediction

Protein:	cpi-2
Organism:	Caenorhabditis elegans
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cpi-2.

Description	E-value	Query Range	Subject Range
gi\|192912, gi\|109759 - gi\|192912\|gb\|AAA63298.1\| cystatin C, pir\|\|A36163 cystatin C precursor - mouse	148.0	[0..1]	[136..8]
CYTC_RAT - (P14841) Cystatin C precursor (Fragment)	143.0	[0..7]	[136..1]
gi\|109093125 - gi\|109093125\|ref\|XP_001097284.1\| PREDICTED: cystatin SA [Macaca mulatta]	143.0	[0..20]	[136..28]
gi\|58081 - gi\|58081\|emb\|CAA31253.1\| ompA - cystatin C fusion preprotein (AA -21 to 120) [synthetic construct]	141.0	[0..3]	[136..11]
gi\|113205858, gi... - gi\|113205858\|ref\|NP_001038067.1\| cystatin C [Sus scrofa], gi\|110006616\|gb\|ABG48755.1\| cystatin C [Su...	140.0	[0..10]	[136..23]
CYTC_SAISC - Cystatin-C OS=Saimiri sciureus GN=CST3 PE=2 SV=1	139.0	[0..18]	[136..31]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAILVFALI AISIISVNAG MMTGGSVEQD ASQKEYSDKA WKAVKGINDQ ASNNGPYYYA  60
   61 PIKVTKASTQ VVAGISTKLE VLVGESNCKK GELQAHEITS SNCQIKDGGS RALYQVTIWE 120
  121 KPWENFEQFT VEKIRDVTAD EQF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	1g96A
Description:	Cystatin C
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits