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View Structure Prediction Details

Protein: fbxb-95
Organism: Caenorhabditis elegans
Length: 294 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fbxb-95.

Description E-value Query
Range
Subject
Range
fbxb-10 - status:Partially_confirmed UniProt:O76637 protein_id:AAC26314.1
163.0 [0..2] [284..27]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPSFPVLR LPSKALRATL QNFAIIDLLS FSLVSPNSVR SLNIRAANVS VTLDFIEIFL  60
   61 VEAAGTHSMF YIKPKS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [77-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HQNREFPIHP VCRWLNRNFS IEKIIKNFLV ALNLLEVKQL RVSKEDATCG KLTGIKFKHV  60
   61 TMVERNRPIF DRFYRDSDSL TLYDRAL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [164-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGEQTRAIFS ENVNSLVLIP SFVVDFNDLL AINATKVDIG RSFTLSNLNL FLRHFINGSN  60
   61 PRLKEIHVSL KGNNLEDFKT TLLNSIKYWT SSISKTYEDG RSIDGLGFLR IDGVEVTIFV 120
  121 DPIRHSYELT C

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 22.031517
Match: PF07735.8
Description: No description for PF07735.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.842 N/A N/A c.52.2 tRNA splicing endonuclease, C-terminal domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle