YRC Public Data Repository - Protein Structure Prediction

Protein:	lin-37
Organism:	Caenorhabditis elegans
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lin-37.

Description	E-value	Query Range	Subject Range
gi\|157774731 - gi\|157774731\|ref\|XP_001665431.1\| hypothetical protein CBG16515 [Caenorhabditis briggsae AF16] gi\|187026322, gi... - gi\|39593964\|emb\|CAE70074.1\| Hypothetical protein CBG16515 [Caenorhabditis briggsae], gi\|187026322\|em...	513.0	[0..1]	[275..1]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEIDPLAEF LLPEDGDRNA RQNDPLISGG PLPLESPSRK LTSLLSYDPT VPESPDMKFA  60
   61 RKRLGNLLTT IKHHPSEIIG VLPEDYTRAD EEPGRQGRPP GRPRKMPRHE SSTSLMESPR 120
  121 KTMTRDSKIM FELRGKPFEM IAGRFEEEYS LGRAWVKGHM NNEYEPI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [168-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAQRTDYAPN LAVDYLACRE IHRMPRPDKS IPELPIVPSR IDEFDATVDP RYETDLKNEY  60
   61 IRHWKQVKKG WCAHQRRRTA PHARSIALIN KIYQPGESKT VEQALGLI