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View Structure Prediction Details

Protein: npp-20
Organism: Caenorhabditis elegans
Length: 313 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for npp-20.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
325.0 [0..6] [313..1165]

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Predicted Domain #1
Region A:
Residues: [1-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTVRQRIDT QHRDAIHDAQ LNIYGSRLAT CGSDRLVKIF EVRPNGQSYP MAELVGHSGP  60
   61 VWKVSWAHPK YGGLLASASY DKKVIIWNEQ QGRWQKAYEW AAHEASTTCV AFAPHQYGLM 120
  121 LASASADGDI GILRYDNSSN EWISSKIQKC HEQGVNSVCW APGSADPAAK KRLVSAGNDK 180
  181 NVKIWAFDDA TNEWILEKTL AGHTDFVREA AWCPVTNNGQ HTIVSCGMEG NLVLFRTSNI 240
  241 ETEEWKAKLL ETAPCALYHS SFSPCGSFLS VAGDDNVITI WRENLQGQWI KVPRDNKERE 300
  301 GMSQAVGAPG AQR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.69897
Match: 2pm7B
Description: No description for 2pm7B was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle