YRC Public Data Repository - Protein Structure Prediction

Protein:	CE25385
Organism:	Caenorhabditis elegans
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE25385.

Description	E-value	Query Range	Subject Range
gi\|187033555, gi... - gi\|39587040\|emb\|CAE62975.1\| Hypothetical protein CBG07193 [Caenorhabditis briggsae], gi\|187033555\|em... gi\|157753726 - gi\|157753726\|ref\|XP_001680575.1\| Hypothetical protein CBG07193 [Caenorhabditis briggsae AF16]	186.0	[0..1]	[121..1]

Back

Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLTSILGS ERDRAAKKRR SLEVNLHRLE EKAFLLEMEL EETRRQKEKV IKELRNGLPV  60
   61 RHVSTVSVSS TDMSFNTDSS NVTDHYCGLP IDSSTPKETS KRDFQQKHEQ YAEEEGERAK 120
  121 WQSSAKLGEK SEKSEKSIEK Y

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits