YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE25336
Organism: Caenorhabditis elegans
Length: 252 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE25336.

Description E-value Query
Range
Subject
Range
gi|114557924 - gi|114557924|ref|XP_513572.2| PREDICTED: estrogen receptor binding protein [Pan troglodytes]
292.0 [0..15] [228..881]

Back

Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALYFKKLR KQQNPDVSSS EDSDSDEEIP KKKQKQQKPV AEEFDDFVVD RAVREEAPKE  60
   61 GAFEAVDLLG TSYLEPYEMD KDLQELLEKS VVG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [94-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKFEGDHQPQ NRLLGRNAAA RLKKSEREKT KGSAWFNLPA TELTDEHKRD LEFLQMRSTL  60
   61 DPLAHYRRND RAVLPKYFQV GRVVDAPEDF YSSRMVRKER KKTMVDEILH NEESLSKAKK 120
  121 KYAEIRQKEQ SKRRGAFQKF GNRKSHKQQR ESKMKNKKK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 48.086186
Match: PF08698.2
Description: No description for PF08698.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle