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View Structure Prediction Details

Protein: CE25311
Organism: Caenorhabditis elegans
Length: 766 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE25311.

Description E-value Query
Range
Subject
Range
gi|39591297, gi|... - gi|39591297|emb|CAE73350.1| Hypothetical protein CBG20782 [Caenorhabditis briggsae], gi|187023054|em...
gi|157752678 - gi|157752678|ref|XP_001680051.1| Hypothetical protein CBG20782 [Caenorhabditis briggsae AF16]
522.0 [0..63] [766..18]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDPVEGKGG PQPRGGKKKD ADDEKNAWEE GDFIDEKIHL KLSRGSTCTS SATSSAPSST  60
   61 SSTRARRNWS VFSERLRETL SRVGGGGPSS TTDSLILFDV KRVGDCMWIC ERAASPPSSF 120
  121 DSSSSDSDDD SFLRIFKFFP 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.30103
Match: 1wxwA
Description: Crystal structure of Tt1595, a putative SAM-dependent methyltransferase from Thermus thermophillus HB8
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [141-486]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTPAVSLDTL ASGFDNTGNV RIWPGSEALA WTILRDPNKI LGPSLGDGDG GGHRRILELG  60
   61 AGFLGLSSIL IACKVPDSSV WVTDGNMESV RSLEKIRNSN SSLDRCCHVR QLIWGAQELQ 120
  121 QQHTFDTILA ADCVFFSEHH ESLMKCIHSH LRPSGRAILS SPRRKQSLQK FLDYVGTVWS 180
  181 DEFTVCIEPD LNLALEQKIG RIWMDGEEKD EKFPILELKG ALQLGVLKTA DSVALRAGER 240
  241 NGLDMVVEED VVSQVGALVW DTVAQDWADD LARFVAHAGR QRVNMDDISL LTRRNPDLLR 300
  301 AACELAGVDC PQETSGGTKG KPRKRKKDDV TVAPMLRAAP SAPNSQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.522879
Match: 1oriA
Description: Protein arginine N-methyltransferase 1, PRMT1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [487-596]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAPLLAPIQE EDDENDDDDE ITILDDQILH TPQQKSYSKK AKFSEEEAPS SRKRISTSTP  60
   61 KTTAERTLKF PDEITPIRQP NDLQEIVVFN RANLSAIEEE EQQDSFDAFG 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [597-766]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTGGNDSSSK TITNTSSLLR QAEEHRSSIV EPTKDRIEKE RLDRLVPDDE EFENASVDSF  60
   61 DNFNAEPDPA PAPALAPVPE KRTSVFSKKI CSFDFDDDDG DDSFDEPVVV VAEVPKLPVQ 120
  121 QQKTPKASGS ESKKKPEKRP ESSTPSVFSK KNKTIQLDDH DSFDDFDFGI 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
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