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View Structure Prediction Details

Protein: sqv-2
Organism: Caenorhabditis elegans
Length: 330 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sqv-2.

Description E-value Query
Range
Subject
Range
gi|89885393 - gi|89885393|emb|CAJ84707.1| beta-1,3-galactosyltransferase 6 [Caenorhabditis briggsae]
275.0 [0..1] [330..1]

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Predicted Domain #1
Region A:
Residues: [1-330]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFYRTYLLV AGAFCSLCTL AVIFNCGWDD SPPATPSAIN GGGSNAPLIS SPTNLPETFL  60
   61 YISILTSPNE TERRQNVRDT WFRLSTKGPS VFIAKFAVGT MGLAAEDRRL LAEENEKFGD 120
  121 LALLDRHEES YERLAKKTLA CFVHAFANFK FKFFLKTDID SFVRITPLII NLKQIQDPML 180
  181 YWGFLDGRAK PFRKGKWKEP EWNLCDRYLP YQLGGGYVLS YELIRFLAIN AQLFRHYRNE 240
  241 DVSVGAWIGG LDVKYVHDPR FDTEWRSRGC NNEYLITHKH TEQEMQEMFE NLKKTGKLCA 300
  301 KEFQKHPSYV YDFSKAPSEC CTRVNGSNIP 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.09691
Match: 2j0aA
Description: No description for 2j0aA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle