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View Structure Prediction Details

Protein: rme-1
Organism: Caenorhabditis elegans
Length: 589 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rme-1.

Description E-value Query
Range
Subject
Range
gi|109105844 - gi|109105844|ref|XP_001118235.1| PREDICTED: EH-domain containing 1 [Macaca mulatta]
410.0 [0..30] [575..166]

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Predicted Domain #1
Region A:
Residues: [1-589]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNFFRTVPR ANRNEITFYP DYEEEGQKKK KTRSMFSWLG GDSSKKKNKE VLETVSEGLR  60
   61 KIYKQKLLPL EEFHKFHDFH SPALDDPDFD AKPMILLVGQ YSTGKTTFIR YLLESDFPGI 120
  121 RIGPEPTTDR FIAVMHGDEE GSIPGNALVV DAKKQFRALS GFGNAFLNRF QCSTLPNQVL 180
  181 ESVTIVDTPG ILSGEKQRID RGYDFTGVLE WFAERVDRII LLFDAHKLDI SDEFKRCIEA 240
  241 LAGNEDKIRI VLNKSDMVDH QQLMRVYGAL MWSLGKVFKT PEVSRVYLGS FWDHPLHYDL 300
  301 NRRLFQDEQH DLFQDLQALP RNAALRKLND LIKRARLAKV HAYIIAELRK QMPSMIGKDK 360
  361 KKKDLIQNLD KIYEQLQREH NISPGDFPDV NKMREKLQTQ DFSKFNPLKP KLLEVVDGML 420
  421 ATDIARLMAQ IPKEEAAAPA GSNGSADPTV RGGAFSQTTE AETPFGFGRG EGFDKGADEA 480
  481 EWVVSRERTT ADSTFESLGP VNGYLSGRAA KEHMVKSKLP NSVLGKVWKL ADIDKDGQLD 540
  541 ADEFALANYL INLKLEGHEI PSELPKHLIP PSKRGEQDPV YPSLNDNDE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 101.0
Match: 2qptA
Description: No description for 2qptA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle