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View Structure Prediction Details

Protein: glh-1
Organism: Caenorhabditis elegans
Length: 763 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for glh-1.

Description E-value Query
Range
Subject
Range
gi|109077270 - gi|109077270|ref|XP_001100045.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isof...
445.0 [0..51] [746..27]

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Predicted Domain #1
Region A:
Residues: [1-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDGWSDSES AAKAKTGFGS GGGFGGGNNG GSGFGGGKNG GTGFGGGNTG GSGFGGGNTG  60
   61 GSGFGGGKTG GSGFGGGNTC GSGFGGGSTG GSPYGGASSG FGGSTATSGF GSGEKSSAFG 120
  121 GSGGFGGSAT GFGSGGGSFG GGNSGFGEGG HGGGERNNNC FNCQQPGHRS SDCPEPRKER 180
  181 EPRVCYNCQQ PGHTSRECTE ERKPREGRTG GFGGGAGFGN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.221849
Match: 1y0fB
Description: No description for 1y0fB was found.

Predicted Domain #2
Region A:
Residues: [221-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGGNDGFGGD GGFGGGEERG PMKCFNCKGE GHRSAECPEP PRGCFNCGEQ GHRSNECPNP  60
   61 AKPREG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [287-763]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEGEGPKATY VPVEDNMEDV FNMQKISEGL MFNKFFDAEV KLTSSEKTVG IKPCKTFAEA  60
   61 NLTETMQKNV AHAGYSKTTP IQQYALPLVH QGYDIMACAQ TGSGKTAAFL LPIMTRLIDD 120
  121 NNLNTAGEGG CYPRCIILTP TRELADQIYN EGRKFAYQTM MEIKPVYGGL AVGYNKGQIE 180
  181 KGATIIVGTV GRIKHFCEEG TIKLDKCRFF VLDEADRMID AMGFGTDIET IVNYDSMPRK 240
  241 ENRQTLMFSA TFPDSVQEAA RAFLRENYVM IAIDKIGAAN KCVLQEFERC ERSEKKDKLL 300
  301 ELLGIDIDSY TTEKSAEVYT KKTMVFVSQR AMADTLASIL SSAQVPAITI HGAREQRERS 360
  361 EALRQFRNGS KPVLIATAVA ERGLDIKGVD HVINYDMPDN IDDYIHRIGR TGRVGNSGRA 420
  421 TSFISEDCSL LSELVGVLAD AQQIVPDWMQ GAAGGNYGAS GFGSSVPTQV PQDEEGW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 107.0
Match: 2db3A
Description: No description for 2db3A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle