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View Structure Prediction Details

Protein: CE25108
Organism: Caenorhabditis elegans
Length: 317 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE25108.

Description E-value Query
Range
Subject
Range
gi|32406234, gi|... - gi|32406234|ref|XP_323730.1| hypothetical protein [Neurospora crassa], gi|28918546|gb|EAA28218.1| hy...
gi|85085211 - gi|85085211|ref|XP_957454.1| hypothetical protein [Neurospora crassa OR74A]
262.0 [0..41] [314..1178]

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Predicted Domain #1
Region A:
Residues: [1-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPISEPTWAE FPFFFKSAVV ELLPYKNRCC LRKCSKPNQF LVDSTPNHLH DVAIHTCENY  60
   61 TVFTYSDSPD TVFTLKYLKN IGENDLKIEY SESSVLFVPG KNQKFIFKTS IHVENVAADL 120
  121 RLIVVLMLEP LENLWRIADL GGFWRSMRRT YPSRVFVGDT FCYWSGMTLA VVSILGHFSK 180
  181 ILMLFFIPQI INFLYSIPQL FHLVPCPRHR LPKYDPKTDT VS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [223-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVAEFKKTD LKRVGALFIT ICKSIGMLHV KEVEKDGEIY LQINNLTIIN LVLKFAGPLH  60
   61 EKTLNDVLMS IQILCSLLAF FIRFYLASLF YDVVE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle