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View Structure Prediction Details

Protein: clec-159
Organism: Caenorhabditis elegans
Length: 207 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clec-159.

Description E-value Query
Range
Subject
Range
PGCA_BOVIN - Aggrecan core protein OS=Bos taurus GN=ACAN PE=1 SV=3
145.0 [0..5] [204..2135]

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Predicted Domain #1
Region A:
Residues: [1-207]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKLILSALF VALVAADCNM RCPDGYMSFK RTPTPKNSMT GMAILSDTLI SPNQAKKVCE  60
   61 KDGSILTSFE NFDERTKLST VLRDFLTAKK LDRGSMIVDG HRLKNCETTD KTVLATVECR 120
  121 NSSSGFTTDE KHTDNTFMWK SWSATEPGQT IFEKSIESCL QLSISQFPAR SELINDVFCN 180
  181 YVKHPENEGA SDLWNYGAVC GRFPEWI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 1sl6A
Description: Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle