YRC Public Data Repository - Protein Structure Prediction

Protein:	ilys-3
Organism:	Caenorhabditis elegans
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ilys-3.

Description	E-value	Query Range	Subject Range
ilys-5 - status:Confirmed UniProt:Q19698 protein_id:AAA83197.1	194.0	[0..1]	[139..1]
gi\|157770226 - gi\|157770226\|ref\|XP_001676933.1\| Hypothetical protein CBG10836 [Caenorhabditis briggsae AF16] gi\|187030632, gi... - gi\|39586708\|emb\|CAE65750.1\| Hypothetical protein CBG10836 [Caenorhabditis briggsae], gi\|187030632\|em...	190.0	[0..1]	[139..1]
gi\|23263584 - gi\|23263584\|gb\|AAN16212.1\| lysozyme [Calyptogena sp. SB2001_2]	156.0	[0..10]	[138..28]
gi\|22779218 - gi\|22779218\|dbj\|BAC15553.1\| lysozyme [Tapes japonica] gi\|22779218 - gi\|22779218\|dbj\|BAC15553.1\| lysozyme [Venerupis philippinarum]	155.0	[0..9]	[138..10]
gi\|3929696, gi\|7... - pir\|\|T13688 destabilase 2 homolog - fruit fly (Drosophila melanogaster), gi\|3929696\|emb\|CAA21317.1\|...	154.0	[0..15]	[135..30]
gi\|54635953, gi\|... - gi\|54635953\|gb\|EAL25356.1\| GA19580-PA [Drosophila pseudoobscura], gi\|125808531\|ref\|XP_001360781.1\| G...	151.0	[0..15]	[135..24]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVKSLVFLT IAVAYASADC LHCICMRESG CKPIGCNMDV GSLSCGYYQI KLPYYEDCGQ  60
   61 PTKKSGETTE AAWKRCANDL SCATTCVENY YNRYKSQCAG TGQGACEVMA RNHNGGPQGC 120
  121 KHSGTLGYWN GIKSCCGCS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	2dqaA
Description:	No description for 2dqaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits