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View Structure Prediction Details

Protein: cye-1
Organism: Caenorhabditis elegans
Length: 524 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cye-1.

Description E-value Query
Range
Subject
Range
cye-1 - status:Confirmed UniProt:O01501 protein_id:AAP13781.1
312.0 [0..1] [524..1]

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Predicted Domain #1
Region A:
Residues: [1-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRKSSRTA ERVPTTQKPE RKSAILSPHD ELRERLLETA IDMKENIPQR NTRNSSVGSQ  60
   61 KSDCSETRKR RSTKEGPAAK RHSGEKHRNG SREDSLEYIS EYSDDREVGS SSSQSSRTRG 120
  121 QPLPAMPEEE EVFDKSSSSD NLAESEESHE MVRLEERQDI EEEIEDDFDD EEEDVVNDKE 180
  181 EYEEIESEDE DDYPVQNEGF AVTKRLMNDE HMVTAPTFLS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [221-524]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAKCDGIGSP TKVWSLMVKR DEIPRATRFL LGNHPDMDDE KRRILIDWMM EVCESEKLHR  60
   61 ETFHLAVDYV DRYLESSNVE CSTDNFQLVG TAALFIAAKY EEIYPPKCID FAHLTDSAFT 120
  121 CDNIRTMEVL IVKYIGWSLG PITSIQWLST YLQLLGTGKK NKSDHYEEQN MYVPELLRSE 180
  181 YLEMCKILDF LLFEIDSFTF SYRTIAAAVL FVNYEPTCAV EKATGFMQAQ LEKVIEYVEP 240
  241 VCRAFAKQRQ LLDDVIPKHE SIKSDDSHNI QVYVKRSSME PIVKSERERI QHLKARRLHP 300
  301 QRLF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.39794
Match: 1w98B
Description: The structural basis of CDK2 activation by cyclin E
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle