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View Structure Prediction Details

Protein: inx-6
Organism: Caenorhabditis elegans
Length: 389 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for inx-6.

Description E-value Query
Range
Subject
Range
inx-1 - status:Confirmed UniProt:Q17394 protein_id:AAN71842.1
401.0 [0..11] [372..6]

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Predicted Domain #1
Region A:
Residues: [1-129]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQVGAINS VNALISRVFV QPKGDLADRL NSRVTVVILA VSSALLLSSH FIGDPITCWT  60
   61 PAQFNAQWVN FVNQYCFVHG TYFVPLDQQL AFEEEERTKV SIQYYQWVPY VFALQAFLFY 120
  121 IPRFIWKAM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [130-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAYSGYDLAA AVKYVDRFWS ENRDKDDKFK TRLAAFEGRP SVYIWDGIRL ARKKRSRNMA  60
   61 LFYTLSTVWQ 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [200-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVNAWIQFYI LTQLLDSSIY TLWGPSILGD LLQGNDWQTT GHFPRIVHCD FNRRRPASVQ  60
   61 LDTVLCVLTL NIYYEKLFIF LWFWLVFVAV VSTVNCFKWI YYLCNKTKAQ KTIKNYLSTA 120
  121 PIKSTISDDQ FFSALGEDGL FIMDQMALNL GDIPASYLTI SMRNICQDFI ESEDYIDEER 180
  181 TPFVKSIKHT 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle