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View Structure Prediction Details

Protein: pdp-1
Organism: Caenorhabditis elegans
Length: 451 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pdp-1.

Description E-value Query
Range
Subject
Range
gi|39589589, gi|... - gi|39589589|emb|CAE66824.1| Hypothetical protein CBG12191 [Caenorhabditis briggsae], gi|187029689|em...
gi|157746985 - gi|157746985|ref|XP_001668587.1| Hypothetical protein CBG12191 [Caenorhabditis briggsae AF16]
344.0 [0..1] [451..1]

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Predicted Domain #1
Region A:
Residues: [1-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKRKVITEF RRHNRSSRWN ADAHLRAHER SANVEDDAIM RVDTCQLAAN NPIEDFYSAA  60
   61 KCLSSRAFLF GVFDGHGGQQ CSRHISTNLY PYLCASVLKK HEVVDYPSDQ RLEWLFSSSD 120
  121 GHLPNAFKGR ETQHIAEYHK QFKKNANAYT GTVREALKLA FETCDKDLAE NALPSAKGVI 180
  181 DRHAAMVAAS GSCCTLAHIR SRHLHVANLG DAAAVLGVVN PNGSVTARQL SRAHCVDNAD 240
  241 EVHRIRIAHP ASESQTVLRG GRLLGELFPL RAFGDVRYKW PLDLQKVVLE PLGHPPPQHL 300
  301 FTPPYLSTSP EVFYHKLTPN DRFLVLATDG LWEWLDPDTV VRLVHDHTLG TITQQPYVPK 360
  361 SGTSLRQVRE QLKDRARGEQ KTKKPIDENC ATHIIRHALG GVSGGATKQY ERLIDILQVP 420
  421 PGRARNYRDD ITVIVIHFNE TFLDGHEDDE E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.221849
Match: 2pnqA
Description: No description for 2pnqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle