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View Structure Prediction Details

Protein: wrt-4
Organism: Caenorhabditis elegans
Length: 557 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for wrt-4.

Description E-value Query
Range
Subject
Range
gi|1532155 - gi|1532155|gb|AAB17541.1| M75 [Caenorhabditis elegans]
601.0 [0..1] [557..1]

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Predicted Domain #1
Region A:
Residues: [1-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFSLLALVL LSSSYKFTYG SECGDSTIPY SLEVLSSGQP ILGCARPTCF GWHSNGHQLP  60
   61 TNAKFFRIDQ QSDGFLRDDP LAIHTFDAAD PRVYAQQQAS CEQEFQSLSC NPEDQWVGGI 120
  121 APVMNASTTK IVAYKCCTYA PLRASIDRGV ATVSGGQIVV GGEIFADNKP YAFDYISNVE 180
  181 KKIDSEGEIF YEVNIKRFSC LDL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [204-334]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKVDRSVPEI LNSENTIRHV NGHRFVVHQA PTVDVETPVE TGQLVVPQGV QNGQEVIIEE  60
   61 IVAQEGFVQE TNPQPPPPPG QQGGFVQPQG FQPQGGFQPQ GFQPQGFQPQ AFQPQVVQNP 120
  121 VPAAPAGYAP M

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.154902
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [335-557]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFAPSGLQLY YCFPGDAMVN VYNGGFKRMD ELAVGDWVQA LDKNGSQVTF IPVQYWLHRD  60
   61 PKQVADFVEF TLDNGETFSL TEKHLVFVTQ CSVPYSEDEN INANPVPAER VNIGDCFYIA 120
  121 HRKKSQMYQR VKVLDINIVQ KTGIYSPMTS RGHLLVDRIH ASCHSETDNY SLQNTFFTNV 180
  181 LRWKSQIRNY FWTVEDSTNE DNIGYGLNGV MAVLDIVIPS KLM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.69897
Match: 1at0A
Description: 17-KDA FRAGMENT OF HEDGEHOG C-TERMINAL AUTOPROCESSING DOMAIN
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle