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View Structure Prediction Details

Protein: CE24682
Organism: Caenorhabditis elegans
Length: 362 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE24682.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
382.0 [0..3] [360..1195]

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Predicted Domain #1
Region A:
Residues: [1-362]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSECLMFGMD CEARCMTSMT ADEENICFLV GTNNIKNDKN QVNKLFMDPE ASRLMSKTFR  60
   61 HPAGEVRAIA AHPTKSTILA TCTADFSSLG GTHSITIWNI EEDKRTLETV SRLPTEQVMS 120
  121 CLEWEPNSMK CAAMTPFRPE IQLLNMENGP EIVQNLKIPL ENEEDEMFSA TWSPHHDGNM 180
  181 LGVTGGRTAW CIDCRTDNEY LKIRDAHIHR TISMDFNPNL QHVIATCGDD GYVRIWDTRS 240
  241 TSSALTSLHP HAHWVWSVRF HPVHDQLLLT GGSDASVVLS CAQSVSSEQQ IEFRDDEEEE 300
  301 EDDDLVEKLQ DGQLERIDEH EDSVYACAWS SADPWTFASL SYDGRMIVSN VSRKHKYALM 360
  361 QL

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Detection Method: PSI-BLAST
Confidence: 67.0
Match: 1vyhC
Description: PAF-AH Holoenzyme: Lis1/Alfa2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.617869458643564 bayes_pls_golite062009
protein binding 0.0109071915022965 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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