YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE24656
Organism: Caenorhabditis elegans
Length: 305 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE24656.

Description E-value Query
Range
Subject
Range
CE23313 - status:Predicted UniProt:Q9U2T6 protein_id:CAB55141.1
186.0 [0..1] [305..1]

Back

Predicted Domain #1
Region A:
Residues: [1-144]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLSTGFLVL LTALCHVDSL NVNTKLVLIW GSPNDTEISE TYSGSWDECL QKCYCDVTCV  60
   61 VIFRTSAGGE IYKIGTPFSV QKIIGAGGNI VGIKRTQEGC SGTFPRPMFG QTTVTESFTS 120
  121 EKIVYNYTIS EIENDDLTEW KFDF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 22.823909
Match: PF08277.3
Description: No description for PF08277.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [145-305]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYFVQCDEES FASIRGDIAV CISIRTFSGP FCQNRAAGVA LCTEGNGLVI TGAYAYAEGY  60
   61 TIGDYLTKKS NSALLPTRYS NMYFWIDGIR SSSAQYNMSD PTLNGITCFN WGPNSQEGVL 120
  121 NTCAFIEGTS IVRYWDCDAT ENGNSYCLRG AVCRIKPVSH T

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.39794
Match: 1tdqB
Description: Structural basis for the interactions between tenascins and the C-type lectin domains from lecticans: evidence for a cross-linking role for tenascins
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle