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View Structure Prediction Details

Protein: yop-1
Organism: Caenorhabditis elegans
Length: 183 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for yop-1.

Description E-value Query
Range
Subject
Range
gi|109078228 - gi|109078228|ref|XP_001082843.1| PREDICTED: similar to receptor accessory protein 5 [Macaca mulatta]
245.0 [0..3] [179..131]

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Predicted Domain #1
Region A:
Residues: [1-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVPPQVQKV LDDVDKQLHE PSTVTNVLAT VEQKTGVKRL HLVLGVVGLQ ALYLIFGHSA  60
   61 QLVCNFMGFV YPAYMSIKAI ESSNKEDDTQ WLTYWVIFAI LSVVEFFSVQ IVAVFPVYWL 120
  121 FKSIFLLYLY LPSFLGAAKL YHRFVKPVAA RHSGSIDAKI GNFADRVNSA AGKLANEVRD 180
  181 HME

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 40.481486
Match: PF03134.10
Description: No description for PF03134.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle