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View Structure Prediction Details

Protein: CE24439
Organism: Caenorhabditis elegans
Length: 297 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE24439.

Description E-value Query
Range
Subject
Range
gi|7670547 - gi|7670547|dbj|BAA95117.1| unnamed protein product [Mus musculus]
333.0 [0..3] [295..6]

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Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRVEKIKTK KGKRVLVNRA SKTVENDKKA LFCRGAKTNE IISHAMMDLF DMKKPLTTKM  60
   61 DKHNPYHLFE DETPIVRAGS KFDTSLFVLG SNSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.0
Match: 2cxhA
Description: Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [95-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKPNCLTFGR TYDGQLLDMA ELRITSYKSS SNFEAAKMTL GSKPCVILEG AAFESDGDMK  60
   61 RIGNLMVDWF RGPKVDTVRL EGLETVIVFT ALDETNLALR VYRPMLKKSA TATPRVELAE 120
  121 MGPSISFEVM RKKLADDALF KLACKKPKAL MKKRRKNLSE DVFGNQLARV HVGKQRTDDI 180
  181 QTRKVKALRK TPLVEAAPEN AIE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.52
Match: 2cxhA
Description: Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
Matching Structure (courtesy of the PDB):

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