| Protein: | rnp-6 |
| Organism: | Caenorhabditis elegans |
| Length: | 749 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rnp-6.
| Description | E-value | Query Range |
Subject Range |
|
|
333.0 | [0..4] | [482..94] |
|
Region A: Residues: [1-94] |
1 11 21 31 41 51
| | | | | |
1 MEENSADIEN RPVAAFRPAV SVPMPVLPQD GEVFVGPGGK KDAQKIGLGL SKLSSKRKDD 60
61 IQMAKKYAMD ISIKQILLRQ QKQQQENQQR QQMY
|
| Detection Method: |  |
| Confidence: | 26.0 |
| Match: | 2g4bA |
| Description: | No description for 2g4bA was found. |
|
Region A: Residues: [95-299] |
1 11 21 31 41 51
| | | | | |
1 SQALSIMSRI YVGSISFEIR EDMLRRAFDP FGPIKSINMS WDPATGHHKT FAFVEYEVPE 60
61 AALLAQESMN GQMLGGRNLK VNSMMFQEMR LPQNMPQAQP IIDMVQKDAK KYFRVYVSSV 120
121 HPDLSETDLK SVFEAFGEIV KCQLARAPTG RGHRGFGYLE FNNLTSQSEA IAGMNMFDLG 180
181 GQYLRVGKCV TPPDALTYLQ PASVS
|
| Detection Method: | |
| Confidence: | 45.69897 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.10590295737522 | bayes_pls_golite062009 |
| nucleic acid binding | 1.43479844212501 | bayes_pls_golite062009 |
| RNA binding | 0.426544317458995 | bayes_pls_golite062009 |
| protein binding | 0.303849616374798 | bayes_pls_golite062009 |
|
Region A: Residues: [300-388] |
1 11 21 31 41 51
| | | | | |
1 AIPASVSVAC AAITAKVMAA EAAAGSSPKT PSESGGSRAA SPAPRAQSPA TPSSSLPTDI 60
61 ENKAVISSPK KEPEEIEVPP LPPSAPDVV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [389-599] |
1 11 21 31 41 51
| | | | | |
1 KDEPMEIEEE EEYTIPEEKP KPVAIVPPPG LAIPSLVAPP GLIAPTEIGI VVPNPSFLAQ 60
61 QQQKIEEKIE EEEEARTERV KLSTSQRKKM KREKLNQMTF EEKMAQVLGQ QKAVQNQRMA 120
121 DPVTFGALDD TVAWKDPSNE DQTSEDGKML AIMGPGRGGD NVASMALALM DGGSSLMLAN 180
181 NAKAKEAAAA LALEPKKKKK VKEGKKIQPK L
|
| Detection Method: | |
| Confidence: | 1.02 |
| Match: | 2j63A |
| Description: | No description for 2j63A was found. |
|
Region A: Residues: [600-749] |
1 11 21 31 41 51
| | | | | |
1 NTAQALAAAA KAGEMSDALK NEVMNSEDAS LASQEGLEIR GNDARHLLMT KLMRTNRSNV 60
61 IVLRNMVTPQ DIDEFLEGEI REECGKYGNV IDVVIANFAS SGLVKIFVKY SDSMQVDRAK 120
121 AALDGRFFGG NTVKAEAYDQ ILFDHADYTG
|
| Detection Method: | |
| Confidence: | 16.154902 |
| Match: | 1hl6A |
| Description: | CG8781 protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.10590295737522 | bayes_pls_golite062009 |
| nucleic acid binding | 1.43479844212501 | bayes_pls_golite062009 |
| RNA binding | 0.426544317458995 | bayes_pls_golite062009 |
| protein binding | 0.303849616374798 | bayes_pls_golite062009 |
